dnf error conflicting packages between i686 and x86_64
2
I am getting a series of errors similar to this
file /usr/share/doc/glibc/NEWS from install of glibc-2.25-10.fc26.i686 conflicts with file from package glibc-2.25-7.fc26.x86_64
when I try to dnf update, and a Python exception when I dnf install anything. These are a new errors that appeared at the same time, possibly related to a power failure I suffered yesterday in the middle of a dnf update, although the history log appears to suggest it had finished, with some errors, before the power went out.
Full errors for a current dnf update:
Error: Transaction check error:
file /usr/share/doc/glibc/NEWS from install of glibc-2.25-10.fc26.i686 conflicts with file from package glibc-2.25-7.fc26.x86_64
file /usr/share/man/man1/xmlwf.1.gz from install of expat-2.2.4-1.fc26.i686 conflicts with file from package expat-2.2.1-1.fc26.x86_64
file /usr/share/doc/sqlite-libs/README.md from install of sqlite-libs-3.20.1-1.fc26.i686 conflicts with file from package sqlite-libs-3.19.3-1.fc26.x86_64
file /usr/share/doc/gdk-pixbuf2/NEWS from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/cs/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/de/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/es/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/fr/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/fur/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/gl/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/hu/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/id/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/kk/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/lt/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/pl/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/pt_BR/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/sl/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/sr/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/sr@latin/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/sv/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/tr/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/man/man1/gdk-pixbuf-query-loaders.1.gz from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/doc/libidn2/README.md from install of libidn2-2.0.4-1.fc26.i686 conflicts with file from package libidn2-2.0.2-1.fc26.x86_64
file /usr/share/doc/libidn2/NEWS from install of libidn2-2.0.4-1.fc26.i686 conflicts with file from package libidn2-2.0.2-1.fc26.x86_64
file /usr/share/info/libidn2.info.gz from install of libidn2-2.0.4-1.fc26.i686 conflicts with file from package libidn2-2.0.2-1.fc26.x86_64
file /usr/share/man/man1/idn2.1.gz from install of libidn2-2.0.4-1.fc26.i686 conflicts with file from package libidn2-2.0.2-1.fc26.x86_64
file /usr/share/man/man5/cert8.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
file /usr/share/man/man5/cert9.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
file /usr/share/man/man5/key3.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
file /usr/share/man/man5/key4.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
file /usr/share/man/man5/pkcs11.txt.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
file /usr/share/man/man5/secmod.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
file /usr/share/man/man5/k5identity.5.gz from install of krb5-libs-1.15.1-25.fc26.i686 conflicts with file from package krb5-libs-1.15.1-17.fc26.x86_64
file /usr/share/man/man5/k5login.5.gz from install of krb5-libs-1.15.1-25.fc26.i686 conflicts with file from package krb5-libs-1.15.1-17.fc26.x86_64
file /usr/share/man/man5/krb5.conf.5.gz from install of krb5-libs-1.15.1-25.fc26.i686 conflicts with file from package krb5-libs-1.15.1-17.fc26.x86_64
file /usr/share/doc/wine-core/AUTHORS from install of wine-core-2.15-1.fc26.i686 conflicts with file from package wine-core-2.12-1.fc26.x86_64
file /usr/share/doc/wine-core/VERSION from install of wine-core-2.15-1.fc26.i686 conflicts with file from package wine-core-2.12-1.fc26.x86_64
file /usr/share/doc/wine-core/ANNOUNCE from install of wine-core-2.15-1.fc26.i686 conflicts with file from package wine-core-2.12-1.fc26.x86_64
file /usr/share/doc/pango/NEWS from install of pango-1.40.11-3.fc26.i686 conflicts with file from package pango-1.40.7-1.fc26.x86_64
file /usr/share/man/man1/pango-view.1.gz from install of pango-1.40.11-3.fc26.i686 conflicts with file from package pango-1.40.7-1.fc26.x86_64
file /usr/share/doc/gtk3/README from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/doc/gtk3/NEWS from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/cs/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/de/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/es/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/fi/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/fr/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/fur/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/gl/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/hr/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/id/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/kk/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/lt/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/ne/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/pl/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/pt_BR/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/sk/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/sl/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/sr/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/sr@latin/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/man/man1/broadwayd.1.gz from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/man/man1/gtk-launch.1.gz from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/man/man1/gtk-query-immodules-3.0.1.gz from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/doc/libsoup/NEWS from install of libsoup-2.58.2-1.fc26.i686 conflicts with file from package libsoup-2.58.1-2.fc26.x86_64
file /usr/share/doc/libgusb/NEWS from install of libgusb-0.2.11-1.fc26.i686 conflicts with file from package libgusb-0.2.10-1.fc26.x86_64
file /usr/share/doc/p11-kit/NEWS from install of p11-kit-0.23.8-1.fc26.i686 conflicts with file from package p11-kit-0.23.5-3.fc26.x86_64
file /usr/share/man/man1/trust.1.gz from install of p11-kit-0.23.8-1.fc26.i686 conflicts with file from package p11-kit-0.23.5-3.fc26.x86_64
file /usr/share/man/man5/pkcs11.conf.5.gz from install of p11-kit-0.23.8-1.fc26.i686 conflicts with file from package p11-kit-0.23.5-3.fc26.x86_64
file /usr/share/man/man8/p11-kit.8.gz from install of p11-kit-0.23.8-1.fc26.i686 conflicts with file from package p11-kit-0.23.5-3.fc26.x86_64
Error Summary
-------------
Error from dnf install [anything]:
Last metadata expiration check: 0:15:05 ago on Tue 05 Sep 2017 11:09:50 AEST.
Traceback (most recent call last):
File "/bin/dnf", line 58, in <module>
main.user_main(sys.argv[1:], exit_code=True)
File "/usr/lib/python3.6/site-packages/dnf/cli/main.py", line 179, in user_main
errcode = main(args)
File "/usr/lib/python3.6/site-packages/dnf/cli/main.py", line 64, in main
return _main(base, args, cli_class, option_parser_class)
File "/usr/lib/python3.6/site-packages/dnf/cli/main.py", line 99, in _main
return cli_run(cli, base)
File "/usr/lib/python3.6/site-packages/dnf/cli/main.py", line 115, in cli_run
cli.run()
File "/usr/lib/python3.6/site-packages/dnf/cli/cli.py", line 962, in run
return self.command.run()
File "/usr/lib/python3.6/site-packages/dnf/cli/commands/install.py", line 120, in run
self.base.install(pkg_spec, strict=strict, forms=forms)
File "/usr/lib/python3.6/site-packages/dnf/base.py", line 1582, in install
subj._is_arch_specified(self.sack):
File "/usr/lib/python3.6/site-packages/dnf/subject.py", line 71, in _is_arch_specified
q = self._nevra_to_filters(sack.query(), nevra)
File "/usr/lib/python3.6/site-packages/dnf/subject.py", line 49, in _nevra_to_filters
query._filterm(*flags, **{name + '__glob': attr})
File "/usr/lib/python3.6/site-packages/dnf/query.py", line 93, in _filterm
return super(Query, self)._filterm(*args, **nargs)
AttributeError: 'super' object has no attribute '_filterm'
Errors from the end of dnf history info 52 (the update before the power failure):
Scriptlet output:
1 warning: /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.144-5.b01.fc26.x86_64/jre/lib/security/java.security created as /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.144-5.b01.fc26.x86_64/jre/lib/security/java.security.rpmnew
2 error: db5 error(-30969) from dbenv->open: BDB0091 DB_VERSION_MISMATCH: Database environment version mismatch
3 error: cannot open Packages index using db5 - (-30969)
4 error: cannot open Packages database in /var/lib/rpm
5 error: db5 error(-30969) from dbenv->open: BDB0091 DB_VERSION_MISMATCH: Database environment version mismatch
6 error: cannot open Packages index using db5 - (-30969)
7 error: cannot open Packages database in /var/lib/rpm
8 error: db5 error(-30969) from dbenv->open: BDB0091 DB_VERSION_MISMATCH: Database environment version mismatch
9 error: cannot open Packages index using db5 - (-30969)
10 error: cannot open Packages database in /var/lib/rpm
11 error: db5 error(-30969) from dbenv->open: BDB0091 DB_VERSION_MISMATCH: Database environment version mismatch
12 error: cannot open Packages index using db5 - (-30969)
13 error: cannot open Packages database in /var/lib/rpm
14 restored /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.144-5.b01.fc26.x86_64/jre/lib/security/java.security.rpmnew to /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.144-5.b01.fc26.x86_64/jre/lib/security/java.security
fedora dnf cpu-architecture
edited Sep 5 '17 at 1:41
Jeff Schaller
43.1k1159138
asked Sep 5 '17 at 1:23
lvclvc
20628
add a comment |
2
I am getting a series of errors similar to this
file /usr/share/doc/glibc/NEWS from install of glibc-2.25-10.fc26.i686 conflicts with file from package glibc-2.25-7.fc26.x86_64
when I try to dnf update, and a Python exception when I dnf install anything. These are a new errors that appeared at the same time, possibly related to a power failure I suffered yesterday in the middle of a dnf update, although the history log appears to suggest it had finished, with some errors, before the power went out.
Full errors for a current dnf update:
Error: Transaction check error:
file /usr/share/doc/glibc/NEWS from install of glibc-2.25-10.fc26.i686 conflicts with file from package glibc-2.25-7.fc26.x86_64
file /usr/share/man/man1/xmlwf.1.gz from install of expat-2.2.4-1.fc26.i686 conflicts with file from package expat-2.2.1-1.fc26.x86_64
file /usr/share/doc/sqlite-libs/README.md from install of sqlite-libs-3.20.1-1.fc26.i686 conflicts with file from package sqlite-libs-3.19.3-1.fc26.x86_64
file /usr/share/doc/gdk-pixbuf2/NEWS from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/cs/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/de/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/es/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/fr/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/fur/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/gl/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/hu/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/id/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/kk/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/lt/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/pl/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/pt_BR/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/sl/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/sr/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/sr@latin/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/sv/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/tr/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/man/man1/gdk-pixbuf-query-loaders.1.gz from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/doc/libidn2/README.md from install of libidn2-2.0.4-1.fc26.i686 conflicts with file from package libidn2-2.0.2-1.fc26.x86_64
file /usr/share/doc/libidn2/NEWS from install of libidn2-2.0.4-1.fc26.i686 conflicts with file from package libidn2-2.0.2-1.fc26.x86_64
file /usr/share/info/libidn2.info.gz from install of libidn2-2.0.4-1.fc26.i686 conflicts with file from package libidn2-2.0.2-1.fc26.x86_64
file /usr/share/man/man1/idn2.1.gz from install of libidn2-2.0.4-1.fc26.i686 conflicts with file from package libidn2-2.0.2-1.fc26.x86_64
file /usr/share/man/man5/cert8.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
file /usr/share/man/man5/cert9.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
file /usr/share/man/man5/key3.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
file /usr/share/man/man5/key4.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
file /usr/share/man/man5/pkcs11.txt.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
file /usr/share/man/man5/secmod.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
file /usr/share/man/man5/k5identity.5.gz from install of krb5-libs-1.15.1-25.fc26.i686 conflicts with file from package krb5-libs-1.15.1-17.fc26.x86_64
file /usr/share/man/man5/k5login.5.gz from install of krb5-libs-1.15.1-25.fc26.i686 conflicts with file from package krb5-libs-1.15.1-17.fc26.x86_64
file /usr/share/man/man5/krb5.conf.5.gz from install of krb5-libs-1.15.1-25.fc26.i686 conflicts with file from package krb5-libs-1.15.1-17.fc26.x86_64
file /usr/share/doc/wine-core/AUTHORS from install of wine-core-2.15-1.fc26.i686 conflicts with file from package wine-core-2.12-1.fc26.x86_64
file /usr/share/doc/wine-core/VERSION from install of wine-core-2.15-1.fc26.i686 conflicts with file from package wine-core-2.12-1.fc26.x86_64
file /usr/share/doc/wine-core/ANNOUNCE from install of wine-core-2.15-1.fc26.i686 conflicts with file from package wine-core-2.12-1.fc26.x86_64
file /usr/share/doc/pango/NEWS from install of pango-1.40.11-3.fc26.i686 conflicts with file from package pango-1.40.7-1.fc26.x86_64
file /usr/share/man/man1/pango-view.1.gz from install of pango-1.40.11-3.fc26.i686 conflicts with file from package pango-1.40.7-1.fc26.x86_64
file /usr/share/doc/gtk3/README from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/doc/gtk3/NEWS from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/cs/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/de/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/es/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/fi/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/fr/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/fur/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/gl/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/hr/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/id/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/kk/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/lt/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/ne/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/pl/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/pt_BR/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/sk/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/sl/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/sr/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/sr@latin/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/man/man1/broadwayd.1.gz from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/man/man1/gtk-launch.1.gz from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/man/man1/gtk-query-immodules-3.0.1.gz from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/doc/libsoup/NEWS from install of libsoup-2.58.2-1.fc26.i686 conflicts with file from package libsoup-2.58.1-2.fc26.x86_64
file /usr/share/doc/libgusb/NEWS from install of libgusb-0.2.11-1.fc26.i686 conflicts with file from package libgusb-0.2.10-1.fc26.x86_64
file /usr/share/doc/p11-kit/NEWS from install of p11-kit-0.23.8-1.fc26.i686 conflicts with file from package p11-kit-0.23.5-3.fc26.x86_64
file /usr/share/man/man1/trust.1.gz from install of p11-kit-0.23.8-1.fc26.i686 conflicts with file from package p11-kit-0.23.5-3.fc26.x86_64
file /usr/share/man/man5/pkcs11.conf.5.gz from install of p11-kit-0.23.8-1.fc26.i686 conflicts with file from package p11-kit-0.23.5-3.fc26.x86_64
file /usr/share/man/man8/p11-kit.8.gz from install of p11-kit-0.23.8-1.fc26.i686 conflicts with file from package p11-kit-0.23.5-3.fc26.x86_64
Error Summary
-------------
Error from dnf install [anything]:
Last metadata expiration check: 0:15:05 ago on Tue 05 Sep 2017 11:09:50 AEST.
Traceback (most recent call last):
File "/bin/dnf", line 58, in <module>
main.user_main(sys.argv[1:], exit_code=True)
File "/usr/lib/python3.6/site-packages/dnf/cli/main.py", line 179, in user_main
errcode = main(args)
File "/usr/lib/python3.6/site-packages/dnf/cli/main.py", line 64, in main
return _main(base, args, cli_class, option_parser_class)
File "/usr/lib/python3.6/site-packages/dnf/cli/main.py", line 99, in _main
return cli_run(cli, base)
File "/usr/lib/python3.6/site-packages/dnf/cli/main.py", line 115, in cli_run
cli.run()
File "/usr/lib/python3.6/site-packages/dnf/cli/cli.py", line 962, in run
return self.command.run()
File "/usr/lib/python3.6/site-packages/dnf/cli/commands/install.py", line 120, in run
self.base.install(pkg_spec, strict=strict, forms=forms)
File "/usr/lib/python3.6/site-packages/dnf/base.py", line 1582, in install
subj._is_arch_specified(self.sack):
File "/usr/lib/python3.6/site-packages/dnf/subject.py", line 71, in _is_arch_specified
q = self._nevra_to_filters(sack.query(), nevra)
File "/usr/lib/python3.6/site-packages/dnf/subject.py", line 49, in _nevra_to_filters
query._filterm(*flags, **{name + '__glob': attr})
File "/usr/lib/python3.6/site-packages/dnf/query.py", line 93, in _filterm
return super(Query, self)._filterm(*args, **nargs)
AttributeError: 'super' object has no attribute '_filterm'
Errors from the end of dnf history info 52 (the update before the power failure):
Scriptlet output:
1 warning: /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.144-5.b01.fc26.x86_64/jre/lib/security/java.security created as /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.144-5.b01.fc26.x86_64/jre/lib/security/java.security.rpmnew
2 error: db5 error(-30969) from dbenv->open: BDB0091 DB_VERSION_MISMATCH: Database environment version mismatch
3 error: cannot open Packages index using db5 - (-30969)
4 error: cannot open Packages database in /var/lib/rpm
5 error: db5 error(-30969) from dbenv->open: BDB0091 DB_VERSION_MISMATCH: Database environment version mismatch
6 error: cannot open Packages index using db5 - (-30969)
7 error: cannot open Packages database in /var/lib/rpm
8 error: db5 error(-30969) from dbenv->open: BDB0091 DB_VERSION_MISMATCH: Database environment version mismatch
9 error: cannot open Packages index using db5 - (-30969)
10 error: cannot open Packages database in /var/lib/rpm
11 error: db5 error(-30969) from dbenv->open: BDB0091 DB_VERSION_MISMATCH: Database environment version mismatch
12 error: cannot open Packages index using db5 - (-30969)
13 error: cannot open Packages database in /var/lib/rpm
14 restored /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.144-5.b01.fc26.x86_64/jre/lib/security/java.security.rpmnew to /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.144-5.b01.fc26.x86_64/jre/lib/security/java.security
fedora dnf cpu-architecture
edited Sep 5 '17 at 1:41
Jeff Schaller
43.1k1159138
asked Sep 5 '17 at 1:23
lvclvc
20628
add a comment |
2
2
2
I am getting a series of errors similar to this
file /usr/share/doc/glibc/NEWS from install of glibc-2.25-10.fc26.i686 conflicts with file from package glibc-2.25-7.fc26.x86_64
when I try to dnf update, and a Python exception when I dnf install anything. These are a new errors that appeared at the same time, possibly related to a power failure I suffered yesterday in the middle of a dnf update, although the history log appears to suggest it had finished, with some errors, before the power went out.
Full errors for a current dnf update:
Error: Transaction check error:
file /usr/share/doc/glibc/NEWS from install of glibc-2.25-10.fc26.i686 conflicts with file from package glibc-2.25-7.fc26.x86_64
file /usr/share/man/man1/xmlwf.1.gz from install of expat-2.2.4-1.fc26.i686 conflicts with file from package expat-2.2.1-1.fc26.x86_64
file /usr/share/doc/sqlite-libs/README.md from install of sqlite-libs-3.20.1-1.fc26.i686 conflicts with file from package sqlite-libs-3.19.3-1.fc26.x86_64
file /usr/share/doc/gdk-pixbuf2/NEWS from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/cs/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/de/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/es/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/fr/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/fur/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/gl/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/hu/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/id/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/kk/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/lt/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/pl/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/pt_BR/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/sl/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/sr/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/sr@latin/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/sv/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/tr/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/man/man1/gdk-pixbuf-query-loaders.1.gz from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/doc/libidn2/README.md from install of libidn2-2.0.4-1.fc26.i686 conflicts with file from package libidn2-2.0.2-1.fc26.x86_64
file /usr/share/doc/libidn2/NEWS from install of libidn2-2.0.4-1.fc26.i686 conflicts with file from package libidn2-2.0.2-1.fc26.x86_64
file /usr/share/info/libidn2.info.gz from install of libidn2-2.0.4-1.fc26.i686 conflicts with file from package libidn2-2.0.2-1.fc26.x86_64
file /usr/share/man/man1/idn2.1.gz from install of libidn2-2.0.4-1.fc26.i686 conflicts with file from package libidn2-2.0.2-1.fc26.x86_64
file /usr/share/man/man5/cert8.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
file /usr/share/man/man5/cert9.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
file /usr/share/man/man5/key3.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
file /usr/share/man/man5/key4.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
file /usr/share/man/man5/pkcs11.txt.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
file /usr/share/man/man5/secmod.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
file /usr/share/man/man5/k5identity.5.gz from install of krb5-libs-1.15.1-25.fc26.i686 conflicts with file from package krb5-libs-1.15.1-17.fc26.x86_64
file /usr/share/man/man5/k5login.5.gz from install of krb5-libs-1.15.1-25.fc26.i686 conflicts with file from package krb5-libs-1.15.1-17.fc26.x86_64
file /usr/share/man/man5/krb5.conf.5.gz from install of krb5-libs-1.15.1-25.fc26.i686 conflicts with file from package krb5-libs-1.15.1-17.fc26.x86_64
file /usr/share/doc/wine-core/AUTHORS from install of wine-core-2.15-1.fc26.i686 conflicts with file from package wine-core-2.12-1.fc26.x86_64
file /usr/share/doc/wine-core/VERSION from install of wine-core-2.15-1.fc26.i686 conflicts with file from package wine-core-2.12-1.fc26.x86_64
file /usr/share/doc/wine-core/ANNOUNCE from install of wine-core-2.15-1.fc26.i686 conflicts with file from package wine-core-2.12-1.fc26.x86_64
file /usr/share/doc/pango/NEWS from install of pango-1.40.11-3.fc26.i686 conflicts with file from package pango-1.40.7-1.fc26.x86_64
file /usr/share/man/man1/pango-view.1.gz from install of pango-1.40.11-3.fc26.i686 conflicts with file from package pango-1.40.7-1.fc26.x86_64
file /usr/share/doc/gtk3/README from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/doc/gtk3/NEWS from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/cs/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/de/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/es/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/fi/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/fr/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/fur/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/gl/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/hr/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/id/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/kk/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/lt/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/ne/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/pl/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/pt_BR/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/sk/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/sl/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/sr/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/sr@latin/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/man/man1/broadwayd.1.gz from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/man/man1/gtk-launch.1.gz from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/man/man1/gtk-query-immodules-3.0.1.gz from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/doc/libsoup/NEWS from install of libsoup-2.58.2-1.fc26.i686 conflicts with file from package libsoup-2.58.1-2.fc26.x86_64
file /usr/share/doc/libgusb/NEWS from install of libgusb-0.2.11-1.fc26.i686 conflicts with file from package libgusb-0.2.10-1.fc26.x86_64
file /usr/share/doc/p11-kit/NEWS from install of p11-kit-0.23.8-1.fc26.i686 conflicts with file from package p11-kit-0.23.5-3.fc26.x86_64
file /usr/share/man/man1/trust.1.gz from install of p11-kit-0.23.8-1.fc26.i686 conflicts with file from package p11-kit-0.23.5-3.fc26.x86_64
file /usr/share/man/man5/pkcs11.conf.5.gz from install of p11-kit-0.23.8-1.fc26.i686 conflicts with file from package p11-kit-0.23.5-3.fc26.x86_64
file /usr/share/man/man8/p11-kit.8.gz from install of p11-kit-0.23.8-1.fc26.i686 conflicts with file from package p11-kit-0.23.5-3.fc26.x86_64
Error Summary
-------------
Error from dnf install [anything]:
Last metadata expiration check: 0:15:05 ago on Tue 05 Sep 2017 11:09:50 AEST.
Traceback (most recent call last):
File "/bin/dnf", line 58, in <module>
main.user_main(sys.argv[1:], exit_code=True)
File "/usr/lib/python3.6/site-packages/dnf/cli/main.py", line 179, in user_main
errcode = main(args)
File "/usr/lib/python3.6/site-packages/dnf/cli/main.py", line 64, in main
return _main(base, args, cli_class, option_parser_class)
File "/usr/lib/python3.6/site-packages/dnf/cli/main.py", line 99, in _main
return cli_run(cli, base)
File "/usr/lib/python3.6/site-packages/dnf/cli/main.py", line 115, in cli_run
cli.run()
File "/usr/lib/python3.6/site-packages/dnf/cli/cli.py", line 962, in run
return self.command.run()
File "/usr/lib/python3.6/site-packages/dnf/cli/commands/install.py", line 120, in run
self.base.install(pkg_spec, strict=strict, forms=forms)
File "/usr/lib/python3.6/site-packages/dnf/base.py", line 1582, in install
subj._is_arch_specified(self.sack):
File "/usr/lib/python3.6/site-packages/dnf/subject.py", line 71, in _is_arch_specified
q = self._nevra_to_filters(sack.query(), nevra)
File "/usr/lib/python3.6/site-packages/dnf/subject.py", line 49, in _nevra_to_filters
query._filterm(*flags, **{name + '__glob': attr})
File "/usr/lib/python3.6/site-packages/dnf/query.py", line 93, in _filterm
return super(Query, self)._filterm(*args, **nargs)
AttributeError: 'super' object has no attribute '_filterm'
Errors from the end of dnf history info 52 (the update before the power failure):
Scriptlet output:
1 warning: /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.144-5.b01.fc26.x86_64/jre/lib/security/java.security created as /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.144-5.b01.fc26.x86_64/jre/lib/security/java.security.rpmnew
2 error: db5 error(-30969) from dbenv->open: BDB0091 DB_VERSION_MISMATCH: Database environment version mismatch
3 error: cannot open Packages index using db5 - (-30969)
4 error: cannot open Packages database in /var/lib/rpm
5 error: db5 error(-30969) from dbenv->open: BDB0091 DB_VERSION_MISMATCH: Database environment version mismatch
6 error: cannot open Packages index using db5 - (-30969)
7 error: cannot open Packages database in /var/lib/rpm
8 error: db5 error(-30969) from dbenv->open: BDB0091 DB_VERSION_MISMATCH: Database environment version mismatch
9 error: cannot open Packages index using db5 - (-30969)
10 error: cannot open Packages database in /var/lib/rpm
11 error: db5 error(-30969) from dbenv->open: BDB0091 DB_VERSION_MISMATCH: Database environment version mismatch
12 error: cannot open Packages index using db5 - (-30969)
13 error: cannot open Packages database in /var/lib/rpm
14 restored /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.144-5.b01.fc26.x86_64/jre/lib/security/java.security.rpmnew to /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.144-5.b01.fc26.x86_64/jre/lib/security/java.security
fedora dnf cpu-architecture
edited Sep 5 '17 at 1:41
Jeff Schaller
43.1k1159138
asked Sep 5 '17 at 1:23
lvclvc
20628
I am getting a series of errors similar to this
file /usr/share/doc/glibc/NEWS from install of glibc-2.25-10.fc26.i686 conflicts with file from package glibc-2.25-7.fc26.x86_64
when I try to dnf update, and a Python exception when I dnf install anything. These are a new errors that appeared at the same time, possibly related to a power failure I suffered yesterday in the middle of a dnf update, although the history log appears to suggest it had finished, with some errors, before the power went out.
Full errors for a current dnf update:
Error: Transaction check error:
file /usr/share/doc/glibc/NEWS from install of glibc-2.25-10.fc26.i686 conflicts with file from package glibc-2.25-7.fc26.x86_64
file /usr/share/man/man1/xmlwf.1.gz from install of expat-2.2.4-1.fc26.i686 conflicts with file from package expat-2.2.1-1.fc26.x86_64
file /usr/share/doc/sqlite-libs/README.md from install of sqlite-libs-3.20.1-1.fc26.i686 conflicts with file from package sqlite-libs-3.19.3-1.fc26.x86_64
file /usr/share/doc/gdk-pixbuf2/NEWS from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/cs/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/de/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/es/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/fr/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/fur/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/gl/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/hu/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/id/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/kk/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/lt/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/pl/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/pt_BR/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/sl/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/sr/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/sr@latin/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/sv/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/locale/tr/LC_MESSAGES/gdk-pixbuf.mo from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/man/man1/gdk-pixbuf-query-loaders.1.gz from install of gdk-pixbuf2-2.36.9-1.fc26.i686 conflicts with file from package gdk-pixbuf2-2.36.7-1.fc26.x86_64
file /usr/share/doc/libidn2/README.md from install of libidn2-2.0.4-1.fc26.i686 conflicts with file from package libidn2-2.0.2-1.fc26.x86_64
file /usr/share/doc/libidn2/NEWS from install of libidn2-2.0.4-1.fc26.i686 conflicts with file from package libidn2-2.0.2-1.fc26.x86_64
file /usr/share/info/libidn2.info.gz from install of libidn2-2.0.4-1.fc26.i686 conflicts with file from package libidn2-2.0.2-1.fc26.x86_64
file /usr/share/man/man1/idn2.1.gz from install of libidn2-2.0.4-1.fc26.i686 conflicts with file from package libidn2-2.0.2-1.fc26.x86_64
file /usr/share/man/man5/cert8.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
file /usr/share/man/man5/cert9.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
file /usr/share/man/man5/key3.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
file /usr/share/man/man5/key4.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
file /usr/share/man/man5/pkcs11.txt.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
file /usr/share/man/man5/secmod.db.5.gz from install of nss-3.32.0-1.1.fc26.i686 conflicts with file from package nss-3.30.2-1.1.fc26.x86_64
file /usr/share/man/man5/k5identity.5.gz from install of krb5-libs-1.15.1-25.fc26.i686 conflicts with file from package krb5-libs-1.15.1-17.fc26.x86_64
file /usr/share/man/man5/k5login.5.gz from install of krb5-libs-1.15.1-25.fc26.i686 conflicts with file from package krb5-libs-1.15.1-17.fc26.x86_64
file /usr/share/man/man5/krb5.conf.5.gz from install of krb5-libs-1.15.1-25.fc26.i686 conflicts with file from package krb5-libs-1.15.1-17.fc26.x86_64
file /usr/share/doc/wine-core/AUTHORS from install of wine-core-2.15-1.fc26.i686 conflicts with file from package wine-core-2.12-1.fc26.x86_64
file /usr/share/doc/wine-core/VERSION from install of wine-core-2.15-1.fc26.i686 conflicts with file from package wine-core-2.12-1.fc26.x86_64
file /usr/share/doc/wine-core/ANNOUNCE from install of wine-core-2.15-1.fc26.i686 conflicts with file from package wine-core-2.12-1.fc26.x86_64
file /usr/share/doc/pango/NEWS from install of pango-1.40.11-3.fc26.i686 conflicts with file from package pango-1.40.7-1.fc26.x86_64
file /usr/share/man/man1/pango-view.1.gz from install of pango-1.40.11-3.fc26.i686 conflicts with file from package pango-1.40.7-1.fc26.x86_64
file /usr/share/doc/gtk3/README from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/doc/gtk3/NEWS from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/cs/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/de/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/es/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/fi/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/fr/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/fur/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/gl/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/hr/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/id/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/kk/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/lt/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/ne/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/pl/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/pt_BR/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/sk/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/sl/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/sr/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/locale/sr@latin/LC_MESSAGES/gtk30.mo from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/man/man1/broadwayd.1.gz from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/man/man1/gtk-launch.1.gz from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/man/man1/gtk-query-immodules-3.0.1.gz from install of gtk3-3.22.19-1.fc26.i686 conflicts with file from package gtk3-3.22.17-2.fc26.x86_64
file /usr/share/doc/libsoup/NEWS from install of libsoup-2.58.2-1.fc26.i686 conflicts with file from package libsoup-2.58.1-2.fc26.x86_64
file /usr/share/doc/libgusb/NEWS from install of libgusb-0.2.11-1.fc26.i686 conflicts with file from package libgusb-0.2.10-1.fc26.x86_64
file /usr/share/doc/p11-kit/NEWS from install of p11-kit-0.23.8-1.fc26.i686 conflicts with file from package p11-kit-0.23.5-3.fc26.x86_64
file /usr/share/man/man1/trust.1.gz from install of p11-kit-0.23.8-1.fc26.i686 conflicts with file from package p11-kit-0.23.5-3.fc26.x86_64
file /usr/share/man/man5/pkcs11.conf.5.gz from install of p11-kit-0.23.8-1.fc26.i686 conflicts with file from package p11-kit-0.23.5-3.fc26.x86_64
file /usr/share/man/man8/p11-kit.8.gz from install of p11-kit-0.23.8-1.fc26.i686 conflicts with file from package p11-kit-0.23.5-3.fc26.x86_64
Error Summary
-------------
Error from dnf install [anything]:
Last metadata expiration check: 0:15:05 ago on Tue 05 Sep 2017 11:09:50 AEST.
Traceback (most recent call last):
File "/bin/dnf", line 58, in <module>
main.user_main(sys.argv[1:], exit_code=True)
File "/usr/lib/python3.6/site-packages/dnf/cli/main.py", line 179, in user_main
errcode = main(args)
File "/usr/lib/python3.6/site-packages/dnf/cli/main.py", line 64, in main
return _main(base, args, cli_class, option_parser_class)
File "/usr/lib/python3.6/site-packages/dnf/cli/main.py", line 99, in _main
return cli_run(cli, base)
File "/usr/lib/python3.6/site-packages/dnf/cli/main.py", line 115, in cli_run
cli.run()
File "/usr/lib/python3.6/site-packages/dnf/cli/cli.py", line 962, in run
return self.command.run()
File "/usr/lib/python3.6/site-packages/dnf/cli/commands/install.py", line 120, in run
self.base.install(pkg_spec, strict=strict, forms=forms)
File "/usr/lib/python3.6/site-packages/dnf/base.py", line 1582, in install
subj._is_arch_specified(self.sack):
File "/usr/lib/python3.6/site-packages/dnf/subject.py", line 71, in _is_arch_specified
q = self._nevra_to_filters(sack.query(), nevra)
File "/usr/lib/python3.6/site-packages/dnf/subject.py", line 49, in _nevra_to_filters
query._filterm(*flags, **{name + '__glob': attr})
File "/usr/lib/python3.6/site-packages/dnf/query.py", line 93, in _filterm
return super(Query, self)._filterm(*args, **nargs)
AttributeError: 'super' object has no attribute '_filterm'
Errors from the end of dnf history info 52 (the update before the power failure):
Scriptlet output:
1 warning: /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.144-5.b01.fc26.x86_64/jre/lib/security/java.security created as /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.144-5.b01.fc26.x86_64/jre/lib/security/java.security.rpmnew
2 error: db5 error(-30969) from dbenv->open: BDB0091 DB_VERSION_MISMATCH: Database environment version mismatch
3 error: cannot open Packages index using db5 - (-30969)
4 error: cannot open Packages database in /var/lib/rpm
5 error: db5 error(-30969) from dbenv->open: BDB0091 DB_VERSION_MISMATCH: Database environment version mismatch
6 error: cannot open Packages index using db5 - (-30969)
7 error: cannot open Packages database in /var/lib/rpm
8 error: db5 error(-30969) from dbenv->open: BDB0091 DB_VERSION_MISMATCH: Database environment version mismatch
9 error: cannot open Packages index using db5 - (-30969)
10 error: cannot open Packages database in /var/lib/rpm
11 error: db5 error(-30969) from dbenv->open: BDB0091 DB_VERSION_MISMATCH: Database environment version mismatch
12 error: cannot open Packages index using db5 - (-30969)
13 error: cannot open Packages database in /var/lib/rpm
14 restored /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.144-5.b01.fc26.x86_64/jre/lib/security/java.security.rpmnew to /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.144-5.b01.fc26.x86_64/jre/lib/security/java.security
fedora dnf cpu-architecture
fedora dnf cpu-architecture
edited Sep 5 '17 at 1:41
Jeff Schaller
43.1k1159138
asked Sep 5 '17 at 1:23
lvclvc
20628
edited Sep 5 '17 at 1:41
Jeff Schaller
43.1k1159138
asked Sep 5 '17 at 1:23
lvclvc
20628
edited Sep 5 '17 at 1:41
Jeff Schaller
43.1k1159138
edited Sep 5 '17 at 1:41
Jeff Schaller
43.1k1159138
edited Sep 5 '17 at 1:41
Jeff Schaller
43.1k1159138
43.1k1159138
asked Sep 5 '17 at 1:23
lvclvc
20628
asked Sep 5 '17 at 1:23
lvclvc
20628
asked Sep 5 '17 at 1:23
lvclvc
20628
20628
add a comment |
add a comment |
3 Answers
3
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oldest
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4
The most typical cause of this error is trying to install packages without having everything up to date. That sometimes causes new dependencies to be brought in which conflict with packages already on disk, and dnf doesn't know that it should update those otherwise-unrelated packages.
In your case, it seems to be something else, since you are seeing the problem while running the update. Here, though, the error is definitely something out of sync between available and installed versions in the different architectures. For example:
file /usr/share/doc/glibc/NEWS from install of
glibc-2.25-10.fc26.i686 conflicts with file from package
glibc-2.25-7.fc26.x86_64
Linebreaks added to make this obvious: It's trying to install newer i686 packages and it doesn't know to update older glibc.
The first thing I'd check is to see if you have multiple versions of the x86_64 glibc installed. If so, run sudo dnf repoquery --duplicates see the extra versions, and dnf remove --duplicates to clean up. (This will leave the files belonging to the latest package, so is safe even if it tries to remove things which seem important.)
If that's not the case, it may simply be the mirror you are hitting now is not as up-to-date as the one you got earlier. In that case, try sudo dnf clean all and update again.
If that doesn't work, you can often resolve this by temporarily removing all i686 packages. The system will function without them, and then you can do the update, and then put back what you need for compatibility with 32-bit apps.
If you are still getting db errors, you may have a different problem at the RPM level — but start with the above.
answered Sep 5 '17 at 12:19
mattdmmattdm
28.8k1372116
dnf repoquery --duplicatesdoes come out with a long list of mostly x86_64 packages (and some i686 ones), including multiple versions of some packages - but doesn't seem to actually remove any of them. But if I'm understanding you correctly, when it lists two x86_64 versions of a package that would mean I have three of it installed, and it should be safe for me to do something likednf repoquery --duplicates | xargs dnf remove?
– lvc
Sep 6 '17 at 9:26
1
Sorry,dnf remove --duplicatesto remove. I'll add that.
– mattdm
Sep 6 '17 at 15:55
dnf remove --duplicatestells me, twice, that it "would result in removing the following protected packages: dnf, sudo". I found a fedora bugzilla thread discussing removing protected packages, and trieddnf remove --duplicates --disableplugin=protected_packagesfor the same error, anddnf remove --disableplugin=protected_packges libdnf-0:0.9.2-1.fc26.x86_64for the same Python traceback as trying todnf installanything.
– lvc
Sep 7 '17 at 2:42
Hmmm. Given the db errors, can you trysudo rpm --rebuilddb? Should run with no errors and may fix the problem.
– mattdm
Sep 7 '17 at 5:44
rpm --rebuilddbdid indeed run without errors, but doesn't seem to have fixed the problems. The Python traceback makes me wonder if my dnf is finding the wrong version of a module, although it seems strange that the only relevant duplicates arelibdnf.x86_64(ie, native code) but the traceback only mentions pure Python files. Should I perhaps be trying to remove the libdnf dups at the rpm level, and/or reinstall dnf itself? In which case, I would need to find the rpms - would they still be cached on my system somewhere?
– lvc
Sep 7 '17 at 13:39
add a comment |
0
I got past the Python exception by booting from a live USB, and using dnf --installroot=/mnt/fedora; the package conflicts kept coming, including errors when I tried to dnf remove --duplicates or even trying to remove packages one-by-one. So I ended up deciding the system was not fixable, and reinstalling Fedora - along with finally getting around to setting up snapper so there's an easy fix next time something like this happens.
answered Sep 12 '17 at 10:11
lvclvc
20628
add a comment |
0
after every package(uptodate) ready,
vi /etc/dnf/dnf.conf
[main]
gpgcheck=1
installonly_limit=3
clean_requirements_on_remove=True
exactarch=1 ##<--add line this
after save to $(prompt)
dnf clean all
dnf update
answered 12 mins ago
Jungsuep YoonJungsuep Yoon
11
New contributor
Jungsuep Yoon is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
would be pleased, paste[solved]; thanks
– Jungsuep Yoon
10 mins ago
add a comment |
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4
The most typical cause of this error is trying to install packages without having everything up to date. That sometimes causes new dependencies to be brought in which conflict with packages already on disk, and dnf doesn't know that it should update those otherwise-unrelated packages.
In your case, it seems to be something else, since you are seeing the problem while running the update. Here, though, the error is definitely something out of sync between available and installed versions in the different architectures. For example:
file /usr/share/doc/glibc/NEWS from install of
glibc-2.25-10.fc26.i686 conflicts with file from package
glibc-2.25-7.fc26.x86_64
Linebreaks added to make this obvious: It's trying to install newer i686 packages and it doesn't know to update older glibc.
The first thing I'd check is to see if you have multiple versions of the x86_64 glibc installed. If so, run sudo dnf repoquery --duplicates see the extra versions, and dnf remove --duplicates to clean up. (This will leave the files belonging to the latest package, so is safe even if it tries to remove things which seem important.)
If that's not the case, it may simply be the mirror you are hitting now is not as up-to-date as the one you got earlier. In that case, try sudo dnf clean all and update again.
If that doesn't work, you can often resolve this by temporarily removing all i686 packages. The system will function without them, and then you can do the update, and then put back what you need for compatibility with 32-bit apps.
If you are still getting db errors, you may have a different problem at the RPM level — but start with the above.
answered Sep 5 '17 at 12:19
mattdmmattdm
28.8k1372116
dnf repoquery --duplicatesdoes come out with a long list of mostly x86_64 packages (and some i686 ones), including multiple versions of some packages - but doesn't seem to actually remove any of them. But if I'm understanding you correctly, when it lists two x86_64 versions of a package that would mean I have three of it installed, and it should be safe for me to do something likednf repoquery --duplicates | xargs dnf remove?
– lvc
Sep 6 '17 at 9:26
1
Sorry,dnf remove --duplicatesto remove. I'll add that.
– mattdm
Sep 6 '17 at 15:55
dnf remove --duplicatestells me, twice, that it "would result in removing the following protected packages: dnf, sudo". I found a fedora bugzilla thread discussing removing protected packages, and trieddnf remove --duplicates --disableplugin=protected_packagesfor the same error, anddnf remove --disableplugin=protected_packges libdnf-0:0.9.2-1.fc26.x86_64for the same Python traceback as trying todnf installanything.
– lvc
Sep 7 '17 at 2:42
Hmmm. Given the db errors, can you trysudo rpm --rebuilddb? Should run with no errors and may fix the problem.
– mattdm
Sep 7 '17 at 5:44
rpm --rebuilddbdid indeed run without errors, but doesn't seem to have fixed the problems. The Python traceback makes me wonder if my dnf is finding the wrong version of a module, although it seems strange that the only relevant duplicates arelibdnf.x86_64(ie, native code) but the traceback only mentions pure Python files. Should I perhaps be trying to remove the libdnf dups at the rpm level, and/or reinstall dnf itself? In which case, I would need to find the rpms - would they still be cached on my system somewhere?
– lvc
Sep 7 '17 at 13:39
add a comment |
4
The most typical cause of this error is trying to install packages without having everything up to date. That sometimes causes new dependencies to be brought in which conflict with packages already on disk, and dnf doesn't know that it should update those otherwise-unrelated packages.
In your case, it seems to be something else, since you are seeing the problem while running the update. Here, though, the error is definitely something out of sync between available and installed versions in the different architectures. For example:
file /usr/share/doc/glibc/NEWS from install of
glibc-2.25-10.fc26.i686 conflicts with file from package
glibc-2.25-7.fc26.x86_64
Linebreaks added to make this obvious: It's trying to install newer i686 packages and it doesn't know to update older glibc.
The first thing I'd check is to see if you have multiple versions of the x86_64 glibc installed. If so, run sudo dnf repoquery --duplicates see the extra versions, and dnf remove --duplicates to clean up. (This will leave the files belonging to the latest package, so is safe even if it tries to remove things which seem important.)
If that's not the case, it may simply be the mirror you are hitting now is not as up-to-date as the one you got earlier. In that case, try sudo dnf clean all and update again.
If that doesn't work, you can often resolve this by temporarily removing all i686 packages. The system will function without them, and then you can do the update, and then put back what you need for compatibility with 32-bit apps.
If you are still getting db errors, you may have a different problem at the RPM level — but start with the above.
answered Sep 5 '17 at 12:19
mattdmmattdm
28.8k1372116
dnf repoquery --duplicatesdoes come out with a long list of mostly x86_64 packages (and some i686 ones), including multiple versions of some packages - but doesn't seem to actually remove any of them. But if I'm understanding you correctly, when it lists two x86_64 versions of a package that would mean I have three of it installed, and it should be safe for me to do something likednf repoquery --duplicates | xargs dnf remove?
– lvc
Sep 6 '17 at 9:26
1
Sorry,dnf remove --duplicatesto remove. I'll add that.
– mattdm
Sep 6 '17 at 15:55
dnf remove --duplicatestells me, twice, that it "would result in removing the following protected packages: dnf, sudo". I found a fedora bugzilla thread discussing removing protected packages, and trieddnf remove --duplicates --disableplugin=protected_packagesfor the same error, anddnf remove --disableplugin=protected_packges libdnf-0:0.9.2-1.fc26.x86_64for the same Python traceback as trying todnf installanything.
– lvc
Sep 7 '17 at 2:42
Hmmm. Given the db errors, can you trysudo rpm --rebuilddb? Should run with no errors and may fix the problem.
– mattdm
Sep 7 '17 at 5:44
rpm --rebuilddbdid indeed run without errors, but doesn't seem to have fixed the problems. The Python traceback makes me wonder if my dnf is finding the wrong version of a module, although it seems strange that the only relevant duplicates arelibdnf.x86_64(ie, native code) but the traceback only mentions pure Python files. Should I perhaps be trying to remove the libdnf dups at the rpm level, and/or reinstall dnf itself? In which case, I would need to find the rpms - would they still be cached on my system somewhere?
– lvc
Sep 7 '17 at 13:39
add a comment |
4
4
4
The most typical cause of this error is trying to install packages without having everything up to date. That sometimes causes new dependencies to be brought in which conflict with packages already on disk, and dnf doesn't know that it should update those otherwise-unrelated packages.
In your case, it seems to be something else, since you are seeing the problem while running the update. Here, though, the error is definitely something out of sync between available and installed versions in the different architectures. For example:
file /usr/share/doc/glibc/NEWS from install of
glibc-2.25-10.fc26.i686 conflicts with file from package
glibc-2.25-7.fc26.x86_64
Linebreaks added to make this obvious: It's trying to install newer i686 packages and it doesn't know to update older glibc.
The first thing I'd check is to see if you have multiple versions of the x86_64 glibc installed. If so, run sudo dnf repoquery --duplicates see the extra versions, and dnf remove --duplicates to clean up. (This will leave the files belonging to the latest package, so is safe even if it tries to remove things which seem important.)
If that's not the case, it may simply be the mirror you are hitting now is not as up-to-date as the one you got earlier. In that case, try sudo dnf clean all and update again.
If that doesn't work, you can often resolve this by temporarily removing all i686 packages. The system will function without them, and then you can do the update, and then put back what you need for compatibility with 32-bit apps.
If you are still getting db errors, you may have a different problem at the RPM level — but start with the above.
answered Sep 5 '17 at 12:19
mattdmmattdm
28.8k1372116
The most typical cause of this error is trying to install packages without having everything up to date. That sometimes causes new dependencies to be brought in which conflict with packages already on disk, and dnf doesn't know that it should update those otherwise-unrelated packages.
In your case, it seems to be something else, since you are seeing the problem while running the update. Here, though, the error is definitely something out of sync between available and installed versions in the different architectures. For example:
file /usr/share/doc/glibc/NEWS from install of
glibc-2.25-10.fc26.i686 conflicts with file from package
glibc-2.25-7.fc26.x86_64
Linebreaks added to make this obvious: It's trying to install newer i686 packages and it doesn't know to update older glibc.
The first thing I'd check is to see if you have multiple versions of the x86_64 glibc installed. If so, run sudo dnf repoquery --duplicates see the extra versions, and dnf remove --duplicates to clean up. (This will leave the files belonging to the latest package, so is safe even if it tries to remove things which seem important.)
If that's not the case, it may simply be the mirror you are hitting now is not as up-to-date as the one you got earlier. In that case, try sudo dnf clean all and update again.
If that doesn't work, you can often resolve this by temporarily removing all i686 packages. The system will function without them, and then you can do the update, and then put back what you need for compatibility with 32-bit apps.
If you are still getting db errors, you may have a different problem at the RPM level — but start with the above.
answered Sep 5 '17 at 12:19
mattdmmattdm
28.8k1372116
edited Sep 6 '17 at 15:58
answered Sep 5 '17 at 12:19
mattdmmattdm
28.8k1372116
answered Sep 5 '17 at 12:19
mattdmmattdm
28.8k1372116
answered Sep 5 '17 at 12:19
mattdmmattdm
28.8k1372116
28.8k1372116
dnf repoquery --duplicatesdoes come out with a long list of mostly x86_64 packages (and some i686 ones), including multiple versions of some packages - but doesn't seem to actually remove any of them. But if I'm understanding you correctly, when it lists two x86_64 versions of a package that would mean I have three of it installed, and it should be safe for me to do something likednf repoquery --duplicates | xargs dnf remove?
– lvc
Sep 6 '17 at 9:26
1
Sorry,dnf remove --duplicatesto remove. I'll add that.
– mattdm
Sep 6 '17 at 15:55
dnf remove --duplicatestells me, twice, that it "would result in removing the following protected packages: dnf, sudo". I found a fedora bugzilla thread discussing removing protected packages, and trieddnf remove --duplicates --disableplugin=protected_packagesfor the same error, anddnf remove --disableplugin=protected_packges libdnf-0:0.9.2-1.fc26.x86_64for the same Python traceback as trying todnf installanything.
– lvc
Sep 7 '17 at 2:42
Hmmm. Given the db errors, can you trysudo rpm --rebuilddb? Should run with no errors and may fix the problem.
– mattdm
Sep 7 '17 at 5:44
rpm --rebuilddbdid indeed run without errors, but doesn't seem to have fixed the problems. The Python traceback makes me wonder if my dnf is finding the wrong version of a module, although it seems strange that the only relevant duplicates arelibdnf.x86_64(ie, native code) but the traceback only mentions pure Python files. Should I perhaps be trying to remove the libdnf dups at the rpm level, and/or reinstall dnf itself? In which case, I would need to find the rpms - would they still be cached on my system somewhere?
– lvc
Sep 7 '17 at 13:39
add a comment |
dnf repoquery --duplicatesdoes come out with a long list of mostly x86_64 packages (and some i686 ones), including multiple versions of some packages - but doesn't seem to actually remove any of them. But if I'm understanding you correctly, when it lists two x86_64 versions of a package that would mean I have three of it installed, and it should be safe for me to do something likednf repoquery --duplicates | xargs dnf remove?
– lvc
Sep 6 '17 at 9:26
1
Sorry,dnf remove --duplicatesto remove. I'll add that.
– mattdm
Sep 6 '17 at 15:55
dnf remove --duplicatestells me, twice, that it "would result in removing the following protected packages: dnf, sudo". I found a fedora bugzilla thread discussing removing protected packages, and trieddnf remove --duplicates --disableplugin=protected_packagesfor the same error, anddnf remove --disableplugin=protected_packges libdnf-0:0.9.2-1.fc26.x86_64for the same Python traceback as trying todnf installanything.
– lvc
Sep 7 '17 at 2:42
Hmmm. Given the db errors, can you trysudo rpm --rebuilddb? Should run with no errors and may fix the problem.
– mattdm
Sep 7 '17 at 5:44
rpm --rebuilddbdid indeed run without errors, but doesn't seem to have fixed the problems. The Python traceback makes me wonder if my dnf is finding the wrong version of a module, although it seems strange that the only relevant duplicates arelibdnf.x86_64(ie, native code) but the traceback only mentions pure Python files. Should I perhaps be trying to remove the libdnf dups at the rpm level, and/or reinstall dnf itself? In which case, I would need to find the rpms - would they still be cached on my system somewhere?
– lvc
Sep 7 '17 at 13:39
dnf repoquery --duplicates does come out with a long list of mostly x86_64 packages (and some i686 ones), including multiple versions of some packages - but doesn't seem to actually remove any of them. But if I'm understanding you correctly, when it lists two x86_64 versions of a package that would mean I have three of it installed, and it should be safe for me to do something like dnf repoquery --duplicates | xargs dnf remove?– lvc
Sep 6 '17 at 9:26
dnf repoquery --duplicates does come out with a long list of mostly x86_64 packages (and some i686 ones), including multiple versions of some packages - but doesn't seem to actually remove any of them. But if I'm understanding you correctly, when it lists two x86_64 versions of a package that would mean I have three of it installed, and it should be safe for me to do something like dnf repoquery --duplicates | xargs dnf remove?– lvc
Sep 6 '17 at 9:26
1
1
Sorry,
dnf remove --duplicates to remove. I'll add that.– mattdm
Sep 6 '17 at 15:55
Sorry,
dnf remove --duplicates to remove. I'll add that.– mattdm
Sep 6 '17 at 15:55
dnf remove --duplicates tells me, twice, that it "would result in removing the following protected packages: dnf, sudo". I found a fedora bugzilla thread discussing removing protected packages, and tried dnf remove --duplicates --disableplugin=protected_packages for the same error, and dnf remove --disableplugin=protected_packges libdnf-0:0.9.2-1.fc26.x86_64 for the same Python traceback as trying to dnf install anything.– lvc
Sep 7 '17 at 2:42
dnf remove --duplicates tells me, twice, that it "would result in removing the following protected packages: dnf, sudo". I found a fedora bugzilla thread discussing removing protected packages, and tried dnf remove --duplicates --disableplugin=protected_packages for the same error, and dnf remove --disableplugin=protected_packges libdnf-0:0.9.2-1.fc26.x86_64 for the same Python traceback as trying to dnf install anything.– lvc
Sep 7 '17 at 2:42
Hmmm. Given the db errors, can you try
sudo rpm --rebuilddb? Should run with no errors and may fix the problem.– mattdm
Sep 7 '17 at 5:44
Hmmm. Given the db errors, can you try
sudo rpm --rebuilddb? Should run with no errors and may fix the problem.– mattdm
Sep 7 '17 at 5:44
rpm --rebuilddb did indeed run without errors, but doesn't seem to have fixed the problems. The Python traceback makes me wonder if my dnf is finding the wrong version of a module, although it seems strange that the only relevant duplicates are libdnf.x86_64 (ie, native code) but the traceback only mentions pure Python files. Should I perhaps be trying to remove the libdnf dups at the rpm level, and/or reinstall dnf itself? In which case, I would need to find the rpms - would they still be cached on my system somewhere?– lvc
Sep 7 '17 at 13:39
rpm --rebuilddb did indeed run without errors, but doesn't seem to have fixed the problems. The Python traceback makes me wonder if my dnf is finding the wrong version of a module, although it seems strange that the only relevant duplicates are libdnf.x86_64 (ie, native code) but the traceback only mentions pure Python files. Should I perhaps be trying to remove the libdnf dups at the rpm level, and/or reinstall dnf itself? In which case, I would need to find the rpms - would they still be cached on my system somewhere?– lvc
Sep 7 '17 at 13:39
add a comment |
0
I got past the Python exception by booting from a live USB, and using dnf --installroot=/mnt/fedora; the package conflicts kept coming, including errors when I tried to dnf remove --duplicates or even trying to remove packages one-by-one. So I ended up deciding the system was not fixable, and reinstalling Fedora - along with finally getting around to setting up snapper so there's an easy fix next time something like this happens.
answered Sep 12 '17 at 10:11
lvclvc
20628
add a comment |
0
I got past the Python exception by booting from a live USB, and using dnf --installroot=/mnt/fedora; the package conflicts kept coming, including errors when I tried to dnf remove --duplicates or even trying to remove packages one-by-one. So I ended up deciding the system was not fixable, and reinstalling Fedora - along with finally getting around to setting up snapper so there's an easy fix next time something like this happens.
answered Sep 12 '17 at 10:11
lvclvc
20628
add a comment |
0
0
0
I got past the Python exception by booting from a live USB, and using dnf --installroot=/mnt/fedora; the package conflicts kept coming, including errors when I tried to dnf remove --duplicates or even trying to remove packages one-by-one. So I ended up deciding the system was not fixable, and reinstalling Fedora - along with finally getting around to setting up snapper so there's an easy fix next time something like this happens.
answered Sep 12 '17 at 10:11
lvclvc
20628
I got past the Python exception by booting from a live USB, and using dnf --installroot=/mnt/fedora; the package conflicts kept coming, including errors when I tried to dnf remove --duplicates or even trying to remove packages one-by-one. So I ended up deciding the system was not fixable, and reinstalling Fedora - along with finally getting around to setting up snapper so there's an easy fix next time something like this happens.
answered Sep 12 '17 at 10:11
lvclvc
20628
answered Sep 12 '17 at 10:11
lvclvc
20628
answered Sep 12 '17 at 10:11
lvclvc
20628
answered Sep 12 '17 at 10:11
lvclvc
20628
20628
add a comment |
add a comment |
0
after every package(uptodate) ready,
vi /etc/dnf/dnf.conf
[main]
gpgcheck=1
installonly_limit=3
clean_requirements_on_remove=True
exactarch=1 ##<--add line this
after save to $(prompt)
dnf clean all
dnf update
answered 12 mins ago
Jungsuep YoonJungsuep Yoon
11
New contributor
Jungsuep Yoon is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
would be pleased, paste[solved]; thanks
– Jungsuep Yoon
10 mins ago
add a comment |
0
after every package(uptodate) ready,
vi /etc/dnf/dnf.conf
[main]
gpgcheck=1
installonly_limit=3
clean_requirements_on_remove=True
exactarch=1 ##<--add line this
after save to $(prompt)
dnf clean all
dnf update
answered 12 mins ago
Jungsuep YoonJungsuep Yoon
11
New contributor
Jungsuep Yoon is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
would be pleased, paste[solved]; thanks
– Jungsuep Yoon
10 mins ago
add a comment |
0
0
0
after every package(uptodate) ready,
vi /etc/dnf/dnf.conf
[main]
gpgcheck=1
installonly_limit=3
clean_requirements_on_remove=True
exactarch=1 ##<--add line this
after save to $(prompt)
dnf clean all
dnf update
answered 12 mins ago
Jungsuep YoonJungsuep Yoon
11
New contributor
Jungsuep Yoon is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
after every package(uptodate) ready,
vi /etc/dnf/dnf.conf
[main]
gpgcheck=1
installonly_limit=3
clean_requirements_on_remove=True
exactarch=1 ##<--add line this
after save to $(prompt)
dnf clean all
dnf update
answered 12 mins ago
Jungsuep YoonJungsuep Yoon
11
New contributor
Jungsuep Yoon is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
answered 12 mins ago
Jungsuep YoonJungsuep Yoon
11
New contributor
Jungsuep Yoon is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
answered 12 mins ago
Jungsuep YoonJungsuep Yoon
11
answered 12 mins ago
Jungsuep YoonJungsuep Yoon
11
11
New contributor
Jungsuep Yoon is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
New contributor
Jungsuep Yoon is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
Jungsuep Yoon is a new contributor to this site. Take care in asking for clarification, commenting, and answering.
Check out our Code of Conduct.
would be pleased, paste[solved]; thanks
– Jungsuep Yoon
10 mins ago
add a comment |
would be pleased, paste[solved]; thanks
– Jungsuep Yoon
10 mins ago
would be pleased, paste[solved]; thanks
– Jungsuep Yoon
10 mins ago
would be pleased, paste[solved]; thanks
– Jungsuep Yoon
10 mins ago
add a comment |
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